| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbxta | 0.331 | cited4b | -0.176 |
| cdx4 | 0.307 | sox3 | -0.140 |
| eve1 | 0.292 | shisa2a | -0.124 |
| hes6 | 0.280 | zgc:100951 | -0.112 |
| wnt11f2 | 0.261 | nanog | -0.111 |
| sebox | 0.219 | zgc:113424 | -0.111 |
| wnt5b | 0.215 | zgc:173742 | -0.109 |
| rasgef1ba | 0.207 | mkrn4 | -0.106 |
| tpbga | 0.197 | inka1a | -0.102 |
| p4ha2 | 0.193 | mknk2a | -0.100 |
| BX927327.1 | 0.169 | vgll4l | -0.100 |
| ybx1 | 0.165 | spink2.1 | -0.099 |
| tbx16 | 0.163 | blf | -0.098 |
| notum1a | 0.160 | cldng | -0.098 |
| wu:fb97g03 | 0.157 | acp5a | -0.098 |
| znfl2a | 0.157 | ska2 | -0.096 |
| aldh1a2 | 0.155 | mycn | -0.096 |
| apela | 0.154 | si:ch211-173m16.2 | -0.095 |
| ndr2 | 0.151 | sec61b | -0.095 |
| arg2 | 0.150 | h2af1al | -0.094 |
| eef1a1l1 | 0.148 | glulb | -0.093 |
| apoc1 | 0.145 | si:ch211-145c1.1 | -0.092 |
| rpl36 | 0.143 | cldnd | -0.092 |
| ier2a | 0.140 | h1m | -0.092 |
| irak3 | 0.139 | tent5c | -0.092 |
| serpinh1b | 0.139 | ccna1 | -0.092 |
| znf703 | 0.138 | rcor1 | -0.091 |
| vrtn | 0.137 | exd2 | -0.089 |
| her7 | 0.137 | si:dkey-11o15.10 | -0.088 |
| nradd | 0.136 | zgc:64022 | -0.088 |
| ddit4 | 0.136 | mid1ip1l | -0.088 |
| rpl30 | 0.136 | fbxo45 | -0.087 |
| cdx1a | 0.135 | sfrp1a | -0.087 |
| rps15a | 0.135 | si:ch73-299h12.2 | -0.086 |
| spry4 | 0.135 | stk35l | -0.085 |