| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbxta | 0.363 | sox3 | -0.328 |
| wnt11f2 | 0.343 | sox19a | -0.244 |
| cth1 | 0.295 | hmgb2a | -0.239 |
| BX927327.1 | 0.280 | si:ch73-1a9.3 | -0.224 |
| osr1 | 0.275 | aldob | -0.223 |
| sebox | 0.272 | si:ch211-152c2.3 | -0.220 |
| foxa | 0.264 | polr3gla | -0.210 |
| lhx1a | 0.260 | marcksl1b | -0.203 |
| fscn1a | 0.260 | si:ch211-222l21.1 | -0.200 |
| mespab | 0.257 | sox2 | -0.197 |
| snai1a | 0.247 | si:ch1073-80i24.3 | -0.188 |
| ndr2 | 0.245 | pkdccb | -0.184 |
| tbx16 | 0.243 | zic2b | -0.180 |
| FP102169.1 | 0.243 | hnrnpa0b | -0.177 |
| fgf8a | 0.240 | alcamb | -0.173 |
| hes6 | 0.232 | crabp2b | -0.170 |
| notum1a | 0.231 | hspb1 | -0.167 |
| eve1 | 0.230 | hmga1a | -0.163 |
| aplnrb | 0.227 | id1 | -0.162 |
| lft1 | 0.223 | sfrp1a | -0.157 |
| wu:fb97g03 | 0.219 | her3 | -0.157 |
| wnt5b | 0.217 | anp32a | -0.150 |
| si:dkey-261j4.5 | 0.214 | asb11 | -0.148 |
| dkk1b | 0.214 | cxcr4b | -0.147 |
| xbp1 | 0.213 | lhx5 | -0.147 |
| cyp27c1 | 0.213 | NC-002333.4 | -0.145 |
| aldh1a2 | 0.213 | pfkfb4b | -0.145 |
| tpbga | 0.212 | hmgn6 | -0.142 |
| zic2a | 0.209 | si:dkey-56m19.5 | -0.138 |
| ddx4 | 0.209 | dynll1 | -0.136 |
| zswim5 | 0.209 | apoeb | -0.134 |
| msgn1 | 0.207 | foxd5 | -0.134 |
| trib3 | 0.204 | sult6b1 | -0.132 |
| acvr1ba | 0.203 | anp32b | -0.131 |
| rasgef1ba | 0.201 | stm | -0.131 |