| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| slit1b | 0.758 | ptmab | -0.190 |
| myl9a | 0.630 | hnrnpaba | -0.170 |
| ctgfa | 0.620 | khdrbs1a | -0.164 |
| vasna | 0.609 | marcksb | -0.150 |
| npr3 | 0.605 | cirbpb | -0.146 |
| trabd2b | 0.592 | hnrnpa0l | -0.145 |
| spon1b | 0.589 | hmgb1b | -0.142 |
| arxa | 0.589 | hnrnpa0b | -0.138 |
| shhb | 0.583 | ddx39ab | -0.137 |
| shha | 0.536 | hmgb2b | -0.136 |
| slit2 | 0.530 | hsp90ab1 | -0.135 |
| cyr61l2 | 0.515 | hmga1a | -0.134 |
| ptgs2a | 0.512 | si:ch211-288g17.3 | -0.134 |
| wnt4b | 0.506 | h2afvb | -0.133 |
| BX908782.3 | 0.505 | tubb2b | -0.131 |
| ntn1b | 0.498 | sox3 | -0.131 |
| col9a3 | 0.483 | cirbpa | -0.131 |
| hpgd | 0.482 | snrpf | -0.128 |
| fxyd1 | 0.478 | hmgn2 | -0.127 |
| scinlb | 0.475 | snrpd1 | -0.127 |
| r3hdml | 0.474 | apex1 | -0.125 |
| sparcl1 | 0.470 | ptmaa | -0.123 |
| spon1a | 0.465 | hnrnpabb | -0.121 |
| si:dkey-208c12.2 | 0.452 | snrpb | -0.121 |
| gpc5b | 0.449 | seta | -0.120 |
| lcn15 | 0.449 | setb | -0.119 |
| scospondin | 0.448 | h3f3a | -0.119 |
| urp2 | 0.436 | snrpe | -0.119 |
| foxa1 | 0.424 | h3f3d | -0.117 |
| sulf1 | 0.420 | si:ch73-1a9.3 | -0.117 |
| olfml2ba | 0.406 | snrpd2 | -0.117 |
| gucy1a1 | 0.392 | cct2 | -0.116 |
| prf1.5 | 0.392 | hmgn6 | -0.116 |
| tmem88b | 0.390 | hdac1 | -0.116 |
| bmp1a | 0.381 | XLOC-003689 | -0.116 |