| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx6 | 0.322 | akap12b | -0.167 |
| dlx5a | 0.315 | cthrc1a | -0.160 |
| hpgd | 0.312 | tnn | -0.159 |
| dlx1a | 0.273 | fstl1a | -0.146 |
| dlx4b | 0.268 | ca6 | -0.130 |
| dlx2a | 0.266 | si:dkey-238c7.16 | -0.123 |
| dlx3b | 0.254 | kitlga | -0.121 |
| sim2 | 0.253 | matn4 | -0.120 |
| mab21l2 | 0.246 | tfpia | -0.115 |
| sim2.1 | 0.237 | fxyd1 | -0.115 |
| spon2b | 0.237 | tmsb4x | -0.112 |
| foxf1 | 0.221 | tbx15 | -0.109 |
| ecrg4a | 0.209 | cdon | -0.108 |
| gsc | 0.205 | crabp2a | -0.105 |
| dlx4a | 0.205 | postnb | -0.103 |
| dlx6a | 0.198 | alcama | -0.103 |
| foxf2a | 0.189 | alx1 | -0.102 |
| foxl1 | 0.187 | pcolcea | -0.101 |
| ptgdsb.2 | 0.185 | pitx2 | -0.101 |
| hand2 | 0.182 | zic2a | -0.100 |
| epha4b | 0.173 | lamc3 | -0.099 |
| fgfbp2a | 0.159 | rhag | -0.098 |
| inhbaa | 0.156 | ccl25b | -0.096 |
| hoxb3a | 0.156 | cxadr | -0.096 |
| lhx8a | 0.155 | lmx1bb | -0.095 |
| net1 | 0.153 | si:ch211-251b21.1 | -0.094 |
| ociad2 | 0.149 | marcksl1b | -0.093 |
| twist2 | 0.146 | CABZ01072614.1 | -0.093 |
| grem2b | 0.145 | XLOC-042222 | -0.091 |
| flot1b | 0.145 | sema3e | -0.091 |
| hoxd4a | 0.144 | zic1 | -0.089 |
| pax9 | 0.140 | emilin1a | -0.089 |
| foxp2 | 0.139 | hoxd9a | -0.089 |
| hoxa2b | 0.136 | alx4a | -0.088 |
| sept5a | 0.135 | tuba8l2 | -0.088 |