Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| matn4 | 0.171 | hmga1a | -0.077 |
| col9a2 | 0.167 | fabp3 | -0.072 |
| col9a3 | 0.167 | stmn1a | -0.063 |
| col9a1a | 0.163 | hmgb2a | -0.062 |
| col2a1a | 0.152 | tmsb4x | -0.057 |
| cnmd | 0.150 | apex1 | -0.057 |
| col2a1b | 0.148 | snrpf | -0.055 |
| col11a1b | 0.143 | dut | -0.054 |
| otos | 0.133 | marcksb | -0.054 |
| sparc | 0.129 | ptges3b | -0.052 |
| col11a2 | 0.125 | mcm7 | -0.052 |
| col11a1a | 0.119 | snrpd1 | -0.051 |
| epyc | 0.118 | si:dkey-151g10.6 | -0.051 |
| wfdc2 | 0.115 | hmgb2b | -0.051 |
| tgfbi | 0.113 | snrpe | -0.050 |
| fibina | 0.111 | lin28a | -0.049 |
| col5a1 | 0.111 | tubb2b | -0.048 |
| ogna | 0.108 | ran | -0.048 |
| mmp2 | 0.107 | khdrbs1a | -0.047 |
| olfml3b | 0.102 | hsp90ab1 | -0.047 |
| ecrg4a | 0.099 | tmem88b | -0.047 |
| cpxm1a | 0.099 | ppid | -0.047 |
| cthrc1a | 0.098 | h2afvb | -0.046 |
| AL929222.2 | 0.098 | cirbpa | -0.046 |
| cdh11 | 0.097 | cdkn2aipnl | -0.046 |
| tnc | 0.096 | snrpb | -0.046 |
| zgc:113531 | 0.096 | pcna | -0.046 |
| CR381618.1 | 0.094 | h3f3a | -0.046 |
| srpx | 0.093 | aldoaa | -0.045 |
| ckap4 | 0.093 | CABZ01075068.1 | -0.045 |
| col27a1b | 0.093 | mycn | -0.045 |
| crispld1b | 0.092 | cbx3a | -0.045 |
| CU929237.1 | 0.088 | pfdn4 | -0.045 |
| foxc1b | 0.088 | alyref | -0.044 |
| foxp4 | 0.086 | ssrp1a | -0.044 |