| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb3a | 0.207 | en2b | -0.053 |
| hoxd4a | 0.170 | otx2a | -0.042 |
| hoxd3a | 0.152 | otx1 | -0.041 |
| hoxa3a | 0.142 | otx2b | -0.038 |
| znf503 | 0.107 | islr2 | -0.038 |
| meis1b | 0.102 | en2a | -0.036 |
| meis2b | 0.100 | mir181b-3 | -0.036 |
| hoxc4a | 0.099 | stm | -0.036 |
| raraa | 0.090 | tcf7l2 | -0.035 |
| rarga | 0.089 | si:ch211-152c2.3 | -0.035 |
| atoh1b | 0.087 | slc6a1b | -0.034 |
| nr2f6b | 0.082 | lef1 | -0.033 |
| mafba | 0.082 | aldob | -0.033 |
| rxrga | 0.082 | irx7 | -0.032 |
| crabp2a | 0.079 | ctnnb1 | -0.032 |
| hoxc1a | 0.078 | emx2 | -0.032 |
| mir219-3 | 0.075 | pou5f3 | -0.032 |
| gbx1 | 0.075 | xpr1a | -0.032 |
| CABZ01075068.1 | 0.074 | polr3gla | -0.032 |
| CR751227.2 | 0.074 | gnl3 | -0.031 |
| rhbdl3 | 0.072 | slc6a1a | -0.030 |
| olig4 | 0.068 | shisa2a | -0.030 |
| phox2bb | 0.068 | foxg1a | -0.030 |
| si:ch211-57n23.4 | 0.068 | apoc1 | -0.030 |
| hand2 | 0.067 | fezf2 | -0.029 |
| LOC798783 | 0.065 | six3a | -0.028 |
| hoxb2a | 0.064 | crabp2b | -0.028 |
| crabp1b | 0.064 | apoeb | -0.028 |
| fibinb | 0.064 | celf2 | -0.028 |
| vim | 0.061 | six3b | -0.027 |
| hoxb5b | 0.061 | sfrp1a | -0.027 |
| zgc:112332 | 0.061 | cnpy1 | -0.027 |
| si:ch73-386h18.1 | 0.059 | zmp:0000000624 | -0.026 |
| wnt11r | 0.059 | add3b | -0.026 |
| atoh1a | 0.059 | sp5l | -0.026 |