| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.180 | NC-002333.4 | -0.145 |
| gtf2a1 | 0.178 | eef1a1l1 | -0.137 |
| h1m | 0.175 | si:ch73-1a9.3 | -0.123 |
| ccna1 | 0.172 | ptmab | -0.123 |
| h2af1al | 0.168 | hmgb2a | -0.118 |
| blf | 0.167 | hspb1 | -0.118 |
| spink2.1 | 0.167 | si:ch211-152c2.3 | -0.117 |
| mkrn4 | 0.166 | si:ch211-222l21.1 | -0.116 |
| rbm7 | 0.163 | hnrnpa0b | -0.110 |
| npc2 | 0.163 | ybx1 | -0.107 |
| cldnd | 0.163 | hmgn2 | -0.105 |
| acp5a | 0.163 | hmgn6 | -0.104 |
| lamp2 | 0.159 | hmga1a | -0.102 |
| si:dkey-68o6.5 | 0.157 | polr3gla | -0.101 |
| zgc:173742 | 0.154 | rpl27 | -0.100 |
| zgc:100951 | 0.154 | rplp1 | -0.097 |
| rcor1 | 0.153 | dynll1 | -0.096 |
| dnajc1 | 0.148 | rpl7a | -0.093 |
| gdf3 | 0.147 | rpl7 | -0.091 |
| cnot8 | 0.145 | rps6 | -0.088 |
| pfn2 | 0.142 | rps2 | -0.086 |
| cdca7a | 0.142 | ncl | -0.086 |
| ccnb2 | 0.141 | rpsa | -0.084 |
| sugt1 | 0.140 | crabp2b | -0.084 |
| ywhaqa | 0.138 | sox2 | -0.083 |
| epcam | 0.137 | rps19 | -0.083 |
| wee2 | 0.137 | mt-co2 | -0.082 |
| si:ch73-299h12.2 | 0.134 | aldob | -0.082 |
| stk35l | 0.134 | rps4x | -0.082 |
| ttf1 | 0.131 | anp32e | -0.081 |
| zgc:113424 | 0.130 | npm1a | -0.080 |
| zgc:77118 | 0.129 | pkdccb | -0.079 |
| dctpp1 | 0.129 | rpl11 | -0.079 |
| ctsba | 0.128 | si:dkey-151g10.6 | -0.077 |
| pho | 0.127 | hmgb2b | -0.076 |