| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zgc:109965 | 0.294 | si:ch211-222l21.1 | -0.159 |
| si:dkey-21o19.2 | 0.292 | pax6a | -0.144 |
| prdm1a | 0.282 | pax6b | -0.136 |
| si:ch73-28h20.1 | 0.279 | rpl9 | -0.135 |
| gngt2a | 0.275 | nme2b.1 | -0.128 |
| otx5 | 0.269 | her15.1 | -0.123 |
| crx | 0.262 | tmsb4x | -0.122 |
| elovl4b | 0.253 | ranbp1 | -0.122 |
| zgc:112294 | 0.249 | tspan7 | -0.117 |
| neurod1 | 0.242 | si:dkey-56m19.5 | -0.114 |
| opn6a | 0.240 | mdka | -0.114 |
| dscamb | 0.233 | nat8l | -0.113 |
| tmx3a | 0.232 | fabp3 | -0.112 |
| nr2e3 | 0.230 | id1 | -0.111 |
| tmem244 | 0.229 | celf2 | -0.109 |
| tulp1a | 0.228 | tubb2b | -0.108 |
| si:dkey-220f10.4 | 0.225 | hes6 | -0.106 |
| hsp90aa1.2 | 0.225 | sox11a | -0.106 |
| samd7 | 0.223 | cldn5a | -0.105 |
| pde6gb | 0.219 | rtca | -0.103 |
| nr2f1b | 0.217 | XLOC-003690 | -0.100 |
| atp2b1b | 0.214 | gpm6aa | -0.100 |
| rxrgb | 0.214 | mcm7 | -0.100 |
| arl13a | 0.213 | sox2 | -0.099 |
| arl3l1 | 0.212 | hsp90ab1 | -0.099 |
| XLOC-014477 | 0.211 | zgc:56493 | -0.098 |
| ndrg1a | 0.210 | rrs1 | -0.098 |
| anp32e | 0.207 | akap12b | -0.096 |
| syt5b | 0.207 | hes2.2 | -0.094 |
| zgc:103625 | 0.206 | sox3 | -0.094 |
| aplnrb | 0.206 | rrm1 | -0.094 |
| six7 | 0.205 | marcksb | -0.093 |
| RASSF5 | 0.202 | ctbp1 | -0.092 |
| unc119b | 0.200 | COX7A2 (1 of many) | -0.092 |
| rpgrip1 | 0.199 | setb | -0.092 |