| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.190 | NC-002333.4 | -0.199 |
| zgc:56676 | 0.180 | ptmab | -0.102 |
| ccna2 | 0.179 | hmgb2a | -0.088 |
| npc2 | 0.178 | si:ch73-1a9.3 | -0.088 |
| h1m | 0.169 | hmga1a | -0.085 |
| cldnd | 0.168 | sox2 | -0.083 |
| ccnb1 | 0.167 | crabp2b | -0.080 |
| glulb | 0.166 | alcamb | -0.076 |
| acp5a | 0.166 | si:ch211-222l21.1 | -0.074 |
| rbm7 | 0.160 | pkdccb | -0.069 |
| si:dkey-68o6.5 | 0.160 | si:ch211-137a8.4 | -0.068 |
| ccna1 | 0.160 | her3 | -0.068 |
| blf | 0.159 | si:ch211-113a14.18 | -0.068 |
| cdca7a | 0.159 | ncl | -0.067 |
| zgc:56699 | 0.158 | tfap2a | -0.065 |
| mkrn4 | 0.157 | cdx4 | -0.064 |
| nme2b.1 | 0.157 | hmgn2 | -0.063 |
| lamp2 | 0.157 | si:dkey-108k21.10 | -0.062 |
| si:dkey-42i9.4 | 0.155 | si:ch211-152c2.3 | -0.061 |
| inka1a | 0.154 | hmgn6 | -0.061 |
| gdf3 | 0.148 | add3b | -0.060 |
| ctsla | 0.147 | XLOC-039121 | -0.059 |
| dnajc1 | 0.147 | hspb1 | -0.059 |
| mphosph6 | 0.146 | hnrnpa0b | -0.057 |
| gtf2e2 | 0.145 | XLOC-026578 | -0.057 |
| gtf2a1 | 0.145 | zgc:110425 | -0.057 |
| bzw1b | 0.144 | LOC103910859 | -0.056 |
| fdx1 | 0.142 | BX927258.1 | -0.055 |
| zgc:101744 | 0.140 | mid1ip1b | -0.055 |
| zgc:173742 | 0.140 | eef1a1l1 | -0.054 |
| dctpp1 | 0.139 | ybx1 | -0.054 |
| rpa3 | 0.139 | XLOC-032526 | -0.054 |
| spink2.1 | 0.138 | akap12b | -0.053 |
| tmed2 | 0.137 | si:ch73-141c7.1 | -0.052 |
| epcam | 0.137 | midn | -0.052 |