| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbx2b | 0.341 | cnmd | -0.106 |
| tbx2a | 0.183 | col2a1a | -0.092 |
| tbx3a | 0.173 | col9a3 | -0.084 |
| prrx1b | 0.142 | col9a2 | -0.084 |
| msx1b | 0.135 | fgfbp2b | -0.082 |
| ttc36 | 0.133 | foxp4 | -0.081 |
| tkta | 0.127 | foxc1b | -0.080 |
| wnt9b | 0.126 | col9a1a | -0.076 |
| alx4a | 0.121 | ucmab | -0.067 |
| bambia | 0.118 | epyc | -0.067 |
| fam69c | 0.115 | otos | -0.065 |
| qdpra | 0.114 | matn4 | -0.063 |
| aqp3b | 0.113 | sox9a | -0.058 |
| msx3 | 0.112 | col11a2 | -0.057 |
| sgms2a | 0.108 | si:dkey-6n6.1 | -0.057 |
| pcbd1 | 0.106 | foxc1a | -0.057 |
| pitx2 | 0.105 | nkx3.2 | -0.056 |
| rhag | 0.104 | ntn1a | -0.055 |
| krt18b | 0.104 | mia | -0.054 |
| ms4a17a.7 | 0.103 | foxd1 | -0.054 |
| tmeff2a | 0.102 | matn1 | -0.053 |
| bambib | 0.102 | acana | -0.052 |
| cdon | 0.101 | snorc | -0.052 |
| gstp1 | 0.098 | ebf3a | -0.052 |
| lmx1ba | 0.098 | foxd2 | -0.051 |
| tfap2b | 0.098 | vwde | -0.051 |
| pitx1 | 0.096 | wwp2 | -0.050 |
| gyg1b | 0.096 | col8a2 | -0.050 |
| scinla | 0.095 | pbx1b | -0.050 |
| fgl2a | 0.094 | zgc:162612 | -0.049 |
| rgs5a | 0.094 | foxf2a | -0.048 |
| mgarp | 0.093 | tnxba | -0.048 |
| rcan2 | 0.091 | col11a1a | -0.048 |
| lrrc58a | 0.091 | tbx15 | -0.047 |
| si:dkey-164f24.2 | 0.091 | zic2a | -0.047 |