Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zfhx3 | 0.136 | id1 | -0.066 |
| scrt1a | 0.131 | XLOC-003690 | -0.058 |
| LOC100537384 | 0.127 | cldn5a | -0.058 |
| zfhx4 | 0.122 | msna | -0.054 |
| nhlh2 | 0.116 | vamp3 | -0.052 |
| stap2a | 0.113 | sdc4 | -0.052 |
| lhx1a | 0.111 | mdka | -0.051 |
| si:ch73-386h18.1 | 0.109 | fosab | -0.051 |
| pou2f2a | 0.106 | msi1 | -0.049 |
| myt1b | 0.106 | sox3 | -0.048 |
| BX571772.1 | 0.100 | tuba8l4 | -0.048 |
| scrt2 | 0.098 | notch3 | -0.047 |
| robo3 | 0.098 | hmgb2a | -0.047 |
| gdf11 | 0.092 | her15.1 | -0.046 |
| elavl3 | 0.092 | cd81a | -0.046 |
| ube2ql1 | 0.089 | cd82a | -0.046 |
| ebf3a | 0.086 | fabp7a | -0.044 |
| pax2b | 0.085 | selenoh | -0.043 |
| hoxb9a | 0.084 | sparc | -0.043 |
| lhx5 | 0.084 | sox19a | -0.043 |
| hoxa9a | 0.083 | cd63 | -0.042 |
| dclk2a | 0.082 | COX7A2 (1 of many) | -0.042 |
| FP017274.1 | 0.082 | sox2 | -0.042 |
| nrn1a | 0.080 | her12 | -0.041 |
| lima1a | 0.078 | ccng1 | -0.041 |
| uncx | 0.077 | jun | -0.041 |
| afap1 | 0.077 | zfp36l1a | -0.039 |
| pax2a | 0.077 | anp32b | -0.039 |
| nsg2 | 0.077 | nop58 | -0.039 |
| CR753844.1 | 0.076 | si:ch211-286b5.5 | -0.039 |
| plekho1a | 0.075 | dut | -0.039 |
| thsd7aa | 0.075 | her2 | -0.038 |
| jagn1a | 0.074 | XLOC-003689 | -0.038 |
| opn7b | 0.074 | ranbp1 | -0.038 |
| chd4a | 0.073 | si:ch73-281n10.2 | -0.038 |