| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| runx1 | 0.207 | XLOC-003690 | -0.062 |
| tbx2b | 0.162 | her15.1 | -0.058 |
| cbfb | 0.160 | mdka | -0.056 |
| tbx20 | 0.159 | id1 | -0.054 |
| phox2a | 0.151 | cldn5a | -0.052 |
| phox2bb | 0.131 | sox3 | -0.052 |
| tbx3a | 0.122 | XLOC-003689 | -0.052 |
| onecut1 | 0.120 | si:dkey-151g10.6 | -0.051 |
| AL954322.2 | 0.120 | XLOC-003692 | -0.047 |
| prph | 0.111 | rps2 | -0.047 |
| smtnl1 | 0.109 | notch3 | -0.046 |
| lmo4b | 0.101 | msi1 | -0.045 |
| gap43 | 0.101 | hmgb2a | -0.043 |
| LOC108191357 | 0.100 | sb:cb81 | -0.043 |
| BX004816.2 | 0.097 | sdc4 | -0.043 |
| shox | 0.095 | her4.2 | -0.043 |
| isl1 | 0.094 | si:ch73-281n10.2 | -0.042 |
| syt1b | 0.094 | her4.1 | -0.042 |
| si:dkey-26h11.2 | 0.093 | btg2 | -0.042 |
| stmn2a | 0.092 | vamp3 | -0.042 |
| inab | 0.092 | COX7A2 (1 of many) | -0.041 |
| mab21l2 | 0.091 | tspan7 | -0.041 |
| map1b | 0.090 | gfap | -0.041 |
| nkx6.1 | 0.089 | sparc | -0.041 |
| mllt11 | 0.089 | rpl28 | -0.040 |
| si:dkey-35i13.1 | 0.088 | gpm6bb | -0.040 |
| si:dkey-43k4.5 | 0.086 | her12 | -0.040 |
| tubb2 | 0.086 | sox19a | -0.039 |
| LOC108180164 | 0.086 | rps3a | -0.038 |
| mmp17a | 0.083 | cd82a | -0.038 |
| LOC100149700 | 0.083 | rps23 | -0.038 |
| slit3 | 0.083 | rplp0 | -0.038 |
| emb | 0.082 | dla | -0.037 |
| XLOC-026839 | 0.082 | notch1b | -0.037 |
| stmn1b | 0.081 | abhd6a | -0.036 |