| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.144 | NC-002333.4 | -0.151 |
| npc2 | 0.144 | hmga1a | -0.108 |
| dnajc1 | 0.144 | hmgb2a | -0.102 |
| cldnd | 0.144 | si:ch73-1a9.3 | -0.098 |
| lamp2 | 0.142 | si:ch211-222l21.1 | -0.092 |
| acp5a | 0.141 | ptmab | -0.085 |
| ctss2.1 | 0.141 | hspb1 | -0.081 |
| h1m | 0.136 | hmgn6 | -0.077 |
| ccnb1 | 0.136 | dynll1 | -0.076 |
| ccna2 | 0.135 | eef1a1l1 | -0.073 |
| zgc:173742 | 0.132 | akap12b | -0.073 |
| gtf2a1 | 0.131 | si:ch211-152c2.3 | -0.073 |
| spink2.1 | 0.130 | serpinh1b | -0.068 |
| zgc:56676 | 0.130 | si:ch211-113a14.18 | -0.066 |
| ccna1 | 0.128 | cdx4 | -0.066 |
| si:dkey-42i9.4 | 0.127 | hnrnpa0b | -0.065 |
| glulb | 0.126 | ncl | -0.063 |
| rcor1 | 0.123 | zgc:110425 | -0.062 |
| si:dkey-68o6.5 | 0.123 | rplp1 | -0.061 |
| cdca7a | 0.122 | polr3gla | -0.061 |
| gdf3 | 0.121 | si:ch73-281n10.2 | -0.061 |
| ccnb2 | 0.119 | hmgn2 | -0.060 |
| blf | 0.116 | npm1a | -0.059 |
| gapdh | 0.116 | ybx1 | -0.059 |
| zgc:77118 | 0.115 | rps2 | -0.059 |
| epcam | 0.114 | si:ch211-137a8.4 | -0.058 |
| pttg1 | 0.114 | crabp2b | -0.058 |
| dctpp1 | 0.113 | marcksl1b | -0.057 |
| fdx1 | 0.113 | stm | -0.056 |
| siva1 | 0.113 | si:dkey-261m9.12 | -0.055 |
| rbm7 | 0.112 | add3b | -0.054 |
| faf2 | 0.112 | rps19 | -0.053 |
| ttf1 | 0.112 | anp32e | -0.052 |
| cdc34a | 0.111 | sox2 | -0.051 |
| abhd10b | 0.111 | alcamb | -0.051 |