| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| asb11 | 0.263 | cdx4 | -0.228 |
| inka1a | 0.258 | tbxta | -0.214 |
| nanog | 0.257 | eve1 | -0.201 |
| blf | 0.256 | wnt11f2 | -0.165 |
| cited4b | 0.243 | BX927327.1 | -0.157 |
| glulb | 0.242 | wu:fb97g03 | -0.156 |
| si:dkey-68o6.5 | 0.214 | hes6 | -0.146 |
| ctsla | 0.214 | wnt5b | -0.140 |
| vgll4l | 0.212 | tpbga | -0.132 |
| cdca7a | 0.210 | rasgef1ba | -0.129 |
| si:ch1073-80i24.3 | 0.209 | im:7138239 | -0.125 |
| rbm7 | 0.196 | sp5a | -0.125 |
| mex3b | 0.194 | sebox | -0.118 |
| zgc:173742 | 0.194 | ybx1 | -0.118 |
| si:dkey-11o15.10 | 0.190 | p4ha2 | -0.116 |
| si:ch73-299h12.3 | 0.190 | msgn1 | -0.113 |
| stk35l | 0.189 | cdx1a | -0.111 |
| sox3 | 0.188 | gata5 | -0.110 |
| mkrn4 | 0.184 | NC-002333.4 | -0.110 |
| ccnd1 | 0.181 | mespab | -0.109 |
| rpa3 | 0.177 | lhx1a | -0.109 |
| pinx1 | 0.175 | nradd | -0.109 |
| ddx5 | 0.175 | eef1a1l1 | -0.109 |
| zgc:56676 | 0.175 | gbx1 | -0.106 |
| ccna2 | 0.174 | efnb2b | -0.104 |
| rtf1 | 0.174 | lmo4a | -0.104 |
| nnr | 0.173 | atp1b3a | -0.104 |
| cxcr4a | 0.172 | dkk1b | -0.103 |
| pho | 0.171 | aldh1a2 | -0.103 |
| npc2 | 0.169 | lef1 | -0.098 |
| gpatch4 | 0.169 | apoc1 | -0.098 |
| dnajc1 | 0.167 | rpl11 | -0.098 |
| zgc:64022 | 0.165 | osr1 | -0.097 |
| tmed2 | 0.165 | plekhg5b | -0.096 |
| XLOC-013632 | 0.164 | dld | -0.095 |