| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.247 | eef1a1l1 | -0.174 |
| spink2.1 | 0.245 | si:ch211-222l21.1 | -0.160 |
| blf | 0.241 | hspb1 | -0.159 |
| h1m | 0.240 | NC-002333.4 | -0.158 |
| zgc:173742 | 0.231 | ptmab | -0.155 |
| npc2 | 0.230 | hmgn2 | -0.148 |
| ccna1 | 0.225 | hmga1a | -0.147 |
| cldnd | 0.224 | ybx1 | -0.146 |
| mkrn4 | 0.210 | add3b | -0.141 |
| acp5a | 0.207 | anp32e | -0.135 |
| rbm7 | 0.206 | si:ch73-1a9.3 | -0.133 |
| gtf2a1 | 0.204 | nop2 | -0.128 |
| ccna2 | 0.203 | si:ch211-152c2.3 | -0.128 |
| zgc:56676 | 0.201 | hnrnpa0b | -0.123 |
| ctsla | 0.197 | cdx4 | -0.123 |
| h2af1al | 0.197 | hmgn6 | -0.123 |
| epcam | 0.194 | hmgb2a | -0.120 |
| si:dkey-68o6.5 | 0.194 | dynll1 | -0.120 |
| gdf3 | 0.191 | npm1a | -0.120 |
| lamp2 | 0.190 | rpsa | -0.119 |
| zgc:100951 | 0.189 | apoc1 | -0.118 |
| nme2b.1 | 0.189 | rpl7a | -0.115 |
| dnajc1 | 0.187 | sox2 | -0.115 |
| gpatch4 | 0.187 | rpl7 | -0.114 |
| thy1 | 0.187 | apoeb | -0.111 |
| rcor1 | 0.186 | rplp1 | -0.111 |
| inka1a | 0.186 | rsl1d1 | -0.110 |
| cdca7a | 0.183 | rps4x | -0.110 |
| ttf1 | 0.183 | sp5l | -0.109 |
| pinx1 | 0.183 | rps6 | -0.107 |
| glulb | 0.182 | BX927258.1 | -0.107 |
| dctpp1 | 0.182 | ncl | -0.107 |
| ctsba | 0.180 | alcamb | -0.107 |
| avd | 0.179 | rplp0 | -0.106 |
| gtf2e2 | 0.179 | rpl11 | -0.105 |