| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| her3 | 0.231 | h1m | -0.171 |
| sox2 | 0.193 | acp5a | -0.150 |
| hmgb2a | 0.189 | si:dkey-261j4.5 | -0.150 |
| si:ch211-222l21.1 | 0.184 | gtf2a1 | -0.141 |
| pkdccb | 0.183 | cth1 | -0.135 |
| si:ch73-1a9.3 | 0.179 | spink2.1 | -0.135 |
| si:ch211-152c2.3 | 0.179 | ccna1 | -0.134 |
| eef1a1l1 | 0.176 | nanog | -0.134 |
| lhx5 | 0.176 | tbx16 | -0.131 |
| add3b | 0.170 | dnajc1 | -0.130 |
| aldob | 0.162 | npc2 | -0.129 |
| anp32a | 0.160 | mkrn4 | -0.129 |
| hmga1a | 0.160 | cldnd | -0.128 |
| sox3 | 0.157 | zgc:173742 | -0.128 |
| alcamb | 0.156 | blf | -0.128 |
| asb11 | 0.154 | tbxta | -0.127 |
| polr3gla | 0.153 | zgc:56676 | -0.127 |
| hspb1 | 0.152 | rbm7 | -0.126 |
| otx2a | 0.152 | wnt11f2 | -0.126 |
| hnrnpa0b | 0.152 | h2af1al | -0.122 |
| sox19a | 0.151 | snai1a | -0.118 |
| pfkfb4b | 0.149 | rcor1 | -0.117 |
| zic3 | 0.145 | lamp2 | -0.117 |
| npm1a | 0.144 | gdf3 | -0.116 |
| anp32e | 0.142 | xbp1 | -0.113 |
| dynll1 | 0.141 | tob1a | -0.111 |
| sfrp1a | 0.140 | wee2 | -0.111 |
| zic2b | 0.140 | mid1ip1l | -0.110 |
| sp5l | 0.140 | si:dkey-68o6.5 | -0.110 |
| hesx1 | 0.138 | f11r.1 | -0.107 |
| rpl7a | 0.137 | zgc:113424 | -0.107 |
| rplp1 | 0.133 | cldn7b | -0.105 |
| lfng | 0.133 | slc16a3 | -0.101 |
| rpsa | 0.132 | zgc:100951 | -0.100 |
| rpl11 | 0.131 | dctpp1 | -0.099 |