| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r | 
| pou4f1 | 0.360 | XLOC-003690 | -0.119 | 
| tfap2a | 0.289 | her15.1 | -0.112 | 
| nrn1a | 0.271 | id1 | -0.107 | 
| hmx3a | 0.250 | cldn5a | -0.104 | 
| hmx2 | 0.229 | XLOC-003689 | -0.102 | 
| tlx2 | 0.213 | msna | -0.099 | 
| tlx3b | 0.189 | hmgb2a | -0.099 | 
| olfm1b | 0.187 | mdka | -0.098 | 
| KCTD15 | 0.184 | sox3 | -0.095 | 
| rbfox3a | 0.180 | sdc4 | -0.090 | 
| adcyap1b | 0.180 | vamp3 | -0.090 | 
| kctd15a | 0.178 | notch3 | -0.089 | 
| ebf3a | 0.176 | btg2 | -0.089 | 
| slc17a6b | 0.175 | zgc:56493 | -0.087 | 
| otpa | 0.170 | COX7A2 (1 of many) | -0.084 | 
| stmn1b | 0.165 | si:ch73-281n10.2 | -0.084 | 
| uncx | 0.164 | her4.2 | -0.082 | 
| foxd3 | 0.162 | her12 | -0.082 | 
| mab21l1 | 0.162 | XLOC-003692 | -0.082 | 
| slc17a6a | 0.157 | msi1 | -0.082 | 
| zfhx3 | 0.151 | sparc | -0.080 | 
| cdk5r1b | 0.146 | fosab | -0.080 | 
| nell2b | 0.145 | sox19a | -0.079 | 
| zfhx4 | 0.145 | tspan7 | -0.079 | 
| gng2 | 0.144 | sb:cb81 | -0.078 | 
| atcaya | 0.143 | her4.1 | -0.077 | 
| celf5a | 0.142 | ccng1 | -0.075 | 
| sncb | 0.142 | dut | -0.073 | 
| stxbp1a | 0.140 | pcna | -0.073 | 
| stx1b | 0.139 | cd82a | -0.073 | 
| gng3 | 0.137 | ranbp1 | -0.072 | 
| elavl3 | 0.135 | selenoh | -0.071 | 
| gpm6ab | 0.135 | rplp1 | -0.071 | 
| jagn1a | 0.135 | si:ch211-286b5.5 | -0.071 | 
| csdc2a | 0.135 | si:dkey-151g10.6 | -0.071 |