| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| scrt1a | 0.262 | id1 | -0.160 |
| stap2a | 0.246 | XLOC-003690 | -0.147 |
| lhx1a | 0.233 | cldn5a | -0.138 |
| jagn1a | 0.216 | msna | -0.122 |
| scrt2 | 0.212 | notch3 | -0.121 |
| myt1b | 0.204 | mdka | -0.120 |
| nhlh2 | 0.200 | sdc4 | -0.116 |
| elavl3 | 0.198 | sox3 | -0.115 |
| lhx5 | 0.198 | vamp3 | -0.113 |
| zfhx3 | 0.191 | msi1 | -0.110 |
| nsg2 | 0.190 | fosab | -0.110 |
| LOC100537384 | 0.186 | her15.1 | -0.109 |
| epb41a | 0.186 | cd82a | -0.105 |
| stxbp1a | 0.186 | XLOC-003689 | -0.105 |
| zgc:77784 | 0.182 | hmgb2a | -0.103 |
| pax2b | 0.180 | COX7A2 (1 of many) | -0.102 |
| si:dkey-280e21.3 | 0.180 | her12 | -0.101 |
| hoxb9a | 0.177 | sox19a | -0.100 |
| ube2ql1 | 0.177 | sparc | -0.100 |
| hoxa9a | 0.176 | her4.1 | -0.099 |
| dclk2a | 0.176 | si:ch73-281n10.2 | -0.099 |
| myt1a | 0.174 | fabp7a | -0.099 |
| gng2 | 0.174 | cd81a | -0.095 |
| robo3 | 0.173 | atp1a1b | -0.094 |
| pax2a | 0.171 | sox2 | -0.094 |
| atcaya | 0.171 | btg2 | -0.094 |
| tmeff1b | 0.169 | pgrmc1 | -0.093 |
| ebf3a | 0.169 | tuba8l | -0.092 |
| si:ch73-386h18.1 | 0.168 | selenoh | -0.092 |
| nrn1a | 0.167 | pcna | -0.091 |
| gdf11 | 0.167 | her2 | -0.091 |
| pou2f2a | 0.167 | cd63 | -0.091 |
| stx1b | 0.165 | si:ch73-265d7.2 | -0.090 |
| thsd7aa | 0.164 | ccnd1 | -0.088 |
| vamp2 | 0.164 | ranbp1 | -0.088 |