| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.236 | XLOC-003690 | -0.146 |
| nsg2 | 0.215 | id1 | -0.144 |
| zc4h2 | 0.201 | hmgb2a | -0.128 |
| jagn1a | 0.201 | cldn5a | -0.122 |
| myt1b | 0.200 | mdka | -0.122 |
| gng2 | 0.199 | her15.1 | -0.117 |
| ywhah | 0.199 | COX7A2 (1 of many) | -0.114 |
| stap2a | 0.198 | XLOC-003689 | -0.114 |
| gng3 | 0.196 | vamp3 | -0.114 |
| lhx5 | 0.193 | msna | -0.112 |
| zfhx3 | 0.192 | sox3 | -0.110 |
| pax8 | 0.192 | sparc | -0.110 |
| elavl3 | 0.190 | sdc4 | -0.107 |
| rtn1b | 0.187 | zgc:56493 | -0.105 |
| cbfa2t3 | 0.187 | btg2 | -0.104 |
| stxbp1a | 0.185 | fosab | -0.102 |
| stx1b | 0.185 | XLOC-003692 | -0.100 |
| stmn1b | 0.182 | her4.1 | -0.098 |
| scrt1a | 0.181 | notch3 | -0.098 |
| si:dkey-280e21.3 | 0.180 | dut | -0.097 |
| pax2a | 0.180 | cd63 | -0.097 |
| hmgb3a | 0.179 | msi1 | -0.096 |
| si:dkey-276j7.1 | 0.177 | si:ch211-286b5.5 | -0.096 |
| adam22 | 0.176 | her12 | -0.095 |
| csdc2a | 0.175 | her4.2 | -0.095 |
| chd4a | 0.175 | stmn1a | -0.095 |
| tmeff1b | 0.175 | selenoh | -0.094 |
| rbfox3a | 0.174 | pcna | -0.093 |
| zfhx4 | 0.174 | si:ch73-281n10.2 | -0.092 |
| vamp2 | 0.172 | sox19a | -0.088 |
| sncb | 0.171 | ccng1 | -0.088 |
| cplx2 | 0.170 | tuba8l4 | -0.087 |
| rtn1a | 0.169 | her2 | -0.087 |
| atcaya | 0.166 | atp1a1b | -0.086 |
| tmem59l | 0.166 | sb:cb81 | -0.086 |