| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| her3 | 0.262 | nanog | -0.138 |
| pkdccb | 0.191 | tbx16 | -0.130 |
| lhx5 | 0.169 | ved | -0.128 |
| sfrp1a | 0.166 | h1m | -0.128 |
| prdm14 | 0.152 | lamp2 | -0.119 |
| ism1 | 0.152 | mkrn4 | -0.117 |
| efnb2b | 0.151 | ccna1 | -0.114 |
| hesx1 | 0.147 | blf | -0.114 |
| irx7 | 0.146 | dnajc1 | -0.114 |
| hmga1a | 0.140 | gtf2a1 | -0.113 |
| sox2 | 0.139 | zgc:173742 | -0.113 |
| hmgn2 | 0.135 | rbm7 | -0.113 |
| fzd7a | 0.135 | spink2.1 | -0.112 |
| irx1b | 0.133 | si:dkey-68o6.5 | -0.110 |
| eef1a1l1 | 0.132 | acp5a | -0.107 |
| alcamb | 0.130 | gdf3 | -0.106 |
| si:ch211-222l21.1 | 0.129 | h2af1al | -0.106 |
| hspb1 | 0.127 | cldnd | -0.105 |
| hnrnpa0b | 0.123 | epcam | -0.105 |
| ripply1 | 0.119 | eve1 | -0.101 |
| si:ch211-152c2.3 | 0.119 | glulb | -0.100 |
| hmgb2a | 0.118 | rcor1 | -0.098 |
| mdkb | 0.117 | dctpp1 | -0.098 |
| zic3 | 0.115 | larp7 | -0.098 |
| midn | 0.115 | ttf1 | -0.097 |
| rpl7 | 0.114 | tent5c | -0.094 |
| efnb2a | 0.114 | cdx4 | -0.094 |
| rpl7a | 0.112 | psme3 | -0.093 |
| ptmab | 0.112 | slc16a3 | -0.093 |
| h2afvb | 0.109 | npc2 | -0.093 |
| gata6 | 0.107 | bambia | -0.091 |
| hmgb2b | 0.105 | ehmt1b | -0.090 |
| sox32 | 0.103 | rpa3 | -0.090 |
| dynll1 | 0.101 | cldn7b | -0.089 |
| rpsa | 0.100 | gpatch4 | -0.089 |