| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| otpb | 0.417 | id1 | -0.170 |
| lhx1a | 0.312 | XLOC-003690 | -0.152 |
| mab21l1 | 0.302 | cldn5a | -0.138 |
| pax2a | 0.299 | msna | -0.137 |
| bhlhe22 | 0.282 | hmgb2a | -0.137 |
| pax8 | 0.277 | fosab | -0.132 |
| uncx | 0.253 | her15.1 | -0.130 |
| scrt1a | 0.249 | zgc:56493 | -0.128 |
| scrt2 | 0.247 | mdka | -0.128 |
| tlx2 | 0.247 | sdc4 | -0.123 |
| mab21l2 | 0.240 | sox3 | -0.123 |
| myt1b | 0.226 | vamp3 | -0.123 |
| si:ch73-386h18.1 | 0.223 | actb2 | -0.120 |
| elavl3 | 0.216 | tuba8l4 | -0.118 |
| nhlh2 | 0.209 | selenoh | -0.114 |
| pax2b | 0.208 | pcna | -0.113 |
| zfhx3 | 0.208 | ccng1 | -0.112 |
| hoxb9a | 0.205 | notch3 | -0.111 |
| lhx5 | 0.201 | stmn1a | -0.111 |
| slc32a1 | 0.200 | XLOC-003689 | -0.111 |
| XLOC-028064 | 0.198 | msi1 | -0.110 |
| hoxa9a | 0.193 | dut | -0.110 |
| zgc:162707 | 0.188 | si:dkey-151g10.6 | -0.108 |
| olfm1b | 0.186 | sox19a | -0.108 |
| zc4h2 | 0.180 | COX7A2 (1 of many) | -0.108 |
| hoxb8a | 0.179 | actb1 | -0.108 |
| stx1b | 0.177 | her12 | -0.107 |
| pik3r3b | 0.176 | btg2 | -0.105 |
| zfhx4 | 0.175 | ranbp1 | -0.105 |
| LOC100537384 | 0.172 | si:ch73-281n10.2 | -0.105 |
| ncanb | 0.172 | sparc | -0.104 |
| ube2ql1 | 0.171 | her2 | -0.103 |
| esrrga | 0.171 | rpl5a | -0.103 |
| ywhah | 0.170 | tuba8l | -0.102 |
| pou4f2 | 0.170 | rpl7 | -0.102 |