| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pax2a | 0.329 | XLOC-003690 | -0.120 |
| pax8 | 0.318 | her15.1 | -0.117 |
| slc6a5 | 0.313 | id1 | -0.116 |
| slc32a1 | 0.291 | hmgb2a | -0.106 |
| cacna2d3 | 0.263 | msna | -0.103 |
| sncgb | 0.246 | cldn5a | -0.100 |
| lhx1a | 0.243 | XLOC-003689 | -0.099 |
| slc30a2 | 0.232 | actb2 | -0.096 |
| nkx1.2lb | 0.231 | mdka | -0.096 |
| dmrt3a | 0.222 | sox3 | -0.096 |
| lhx5 | 0.219 | btg2 | -0.095 |
| nrxn1a | 0.214 | notch3 | -0.094 |
| nrxn3a | 0.205 | vamp3 | -0.087 |
| znf385c | 0.201 | sdc4 | -0.086 |
| stxbp1a | 0.201 | sparc | -0.085 |
| cplx2l | 0.200 | XLOC-003692 | -0.085 |
| rbfox3a | 0.198 | msi1 | -0.085 |
| stx1b | 0.197 | her4.2 | -0.084 |
| pax2b | 0.187 | her4.1 | -0.083 |
| grin1a | 0.184 | si:dkey-151g10.6 | -0.082 |
| spock1 | 0.183 | zgc:56493 | -0.081 |
| mab21l2 | 0.182 | sb:cb81 | -0.080 |
| nsg2 | 0.181 | tspan7 | -0.080 |
| lbx1a | 0.179 | COX7A2 (1 of many) | -0.080 |
| cdk5r1b | 0.176 | rplp1 | -0.080 |
| snap25a | 0.175 | her12 | -0.079 |
| nrxn3b | 0.174 | si:ch211-286b5.5 | -0.079 |
| kcnc3a | 0.170 | tuba8l4 | -0.078 |
| cplx2 | 0.170 | si:ch73-281n10.2 | -0.077 |
| eno2 | 0.168 | sox19a | -0.077 |
| atp6v0cb | 0.164 | gfap | -0.077 |
| sncb | 0.163 | gng5 | -0.077 |
| sh3gl2a | 0.163 | gpm6bb | -0.076 |
| LOC100330246 | 0.163 | ccng1 | -0.076 |
| sypb | 0.161 | fosab | -0.074 |