| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hmx1 | 0.235 | nova2 | -0.062 |
| foxg1d | 0.173 | CR383676.1 | -0.051 |
| mmp25b | 0.142 | marcksl1b | -0.045 |
| six2b | 0.137 | hmgb3a | -0.044 |
| isl2b | 0.133 | nova1 | -0.040 |
| six1b | 0.126 | marcksl1a | -0.039 |
| rx2 | 0.121 | si:ch73-386h18.1 | -0.038 |
| XLOC-003718 | 0.117 | hmgb1a | -0.038 |
| rx1 | 0.116 | gpm6aa | -0.038 |
| vsx2 | 0.104 | sox19a | -0.038 |
| cbfb | 0.103 | mdkb | -0.036 |
| eya4 | 0.103 | rtn1a | -0.036 |
| tbx2b | 0.099 | tuba1c | -0.034 |
| ntrk1 | 0.099 | nr2f1a | -0.034 |
| six1a | 0.098 | pou3f3b | -0.034 |
| six3b | 0.091 | CU634008.1 | -0.033 |
| si:ch211-56a11.2 | 0.085 | zc4h2 | -0.032 |
| tuba8l3 | 0.085 | mt-co2 | -0.032 |
| ngfrb | 0.083 | NC-002333.4 | -0.032 |
| tbx3a | 0.082 | sox3 | -0.031 |
| prkg1a | 0.079 | si:ch211-222l21.1 | -0.031 |
| tbx2a | 0.077 | si:dkey-276j7.1 | -0.030 |
| rx3 | 0.075 | chd4a | -0.030 |
| six4b | 0.074 | pbx4 | -0.030 |
| sst6 | 0.073 | ckbb | -0.029 |
| pcbp4 | 0.073 | pnrc2 | -0.029 |
| vim | 0.072 | pou3f1 | -0.029 |
| eya1 | 0.071 | COX3 | -0.029 |
| AL954322.2 | 0.071 | si:dkey-56m19.5 | -0.029 |
| npr2 | 0.070 | sox11b | -0.029 |
| crip3 | 0.068 | tmeff1b | -0.029 |
| foxg1b | 0.068 | hnrnpa0a | -0.029 |
| pax6b | 0.067 | ptmab | -0.028 |
| myca | 0.062 | her8a | -0.028 |
| isl2a | 0.062 | plp1a | -0.028 |