| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nid2a | 0.321 | cldnh | -0.229 |
| fgf8a | 0.312 | txn | -0.200 |
| akap12b | 0.302 | gstp1 | -0.189 |
| her12 | 0.300 | anxa5b | -0.182 |
| six3b | 0.290 | vamp2 | -0.173 |
| id1 | 0.290 | bik | -0.172 |
| zgc:114130 | 0.281 | calm1b | -0.168 |
| sfrp1a | 0.279 | tprg1 | -0.159 |
| XLOC-003690 | 0.267 | gapdhs | -0.154 |
| mdka | 0.256 | eml2 | -0.153 |
| sox3 | 0.255 | ptmaa | -0.153 |
| her4.1 | 0.250 | calm1a | -0.145 |
| lamb1a | 0.249 | wu:fb18f06 | -0.145 |
| nanos1 | 0.247 | ponzr6 | -0.144 |
| six4b | 0.246 | rnasekb | -0.141 |
| sp8a | 0.243 | calb2a | -0.138 |
| gas1b | 0.240 | tmem59 | -0.138 |
| si:dkey-261h17.1 | 0.238 | COX3 | -0.138 |
| notch3 | 0.233 | atp6v0cb | -0.136 |
| her6 | 0.231 | selenow2b | -0.135 |
| tpm4a | 0.229 | selenow1 | -0.133 |
| fezf1 | 0.229 | rtn1a | -0.133 |
| plekhh1 | 0.229 | gbgt1l4 | -0.131 |
| fzd8a | 0.227 | mvp | -0.129 |
| si:ch211-243g18.2 | 0.225 | tuba1c | -0.128 |
| fgf17 | 0.220 | kcnc1a | -0.128 |
| ppp1r3b | 0.220 | nfe2l2a | -0.128 |
| isl2a | 0.217 | atp6v1e1b | -0.127 |
| dlx5a | 0.216 | gabarapa | -0.126 |
| six1b | 0.213 | bdnf | -0.126 |
| her15.1 | 0.211 | chga | -0.125 |
| gmnn | 0.210 | gsto2 | -0.125 |
| selenoh | 0.210 | scg2a | -0.123 |
| sp8b | 0.209 | gipc2 | -0.121 |
| stra6 | 0.208 | rab6bb | -0.121 |