| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbx1 | 0.131 | cdon | -0.070 |
| ptch2 | 0.111 | msx1b | -0.068 |
| foxc1b | 0.106 | fabp3 | -0.066 |
| foxf2a | 0.104 | ttc36 | -0.056 |
| foxf2b | 0.093 | pcbd1 | -0.055 |
| shisa3 | 0.092 | hpdb | -0.053 |
| foxd2 | 0.085 | zfhx3 | -0.053 |
| foxc1a | 0.081 | bhmt | -0.053 |
| cnmd | 0.080 | fmoda | -0.052 |
| pkdcca | 0.078 | lamc3 | -0.051 |
| sema3bl | 0.078 | cygb1 | -0.048 |
| foxl1 | 0.077 | csf1b | -0.048 |
| tbx15 | 0.075 | tpbga | -0.048 |
| LO018188.1 | 0.074 | si:dkey-151g10.6 | -0.047 |
| sfrp2 | 0.074 | col6a4a | -0.046 |
| fgfr2 | 0.070 | qdpra | -0.046 |
| CR383676.1 | 0.069 | msx3 | -0.046 |
| fgfrl1a | 0.067 | mxra5b | -0.045 |
| ebf3a | 0.066 | rpl39 | -0.044 |
| cxcl12b | 0.066 | twist3 | -0.044 |
| scube1 | 0.066 | rpl38 | -0.043 |
| foxp4 | 0.065 | zic1 | -0.043 |
| id3 | 0.064 | gstp1 | -0.043 |
| wfdc2 | 0.064 | csf1a | -0.043 |
| foxp1b | 0.064 | hgd | -0.043 |
| ebf2 | 0.063 | fstl3 | -0.042 |
| tbx20 | 0.063 | zic3 | -0.042 |
| cdh11 | 0.063 | alcama | -0.041 |
| pmp22a | 0.063 | FQ378018.1 | -0.041 |
| thbs2b | 0.062 | rhag | -0.041 |
| pbx1b | 0.061 | lef1 | -0.041 |
| loxl2b | 0.061 | en1b | -0.040 |
| foxd1 | 0.061 | fabp11a | -0.040 |
| tgfbi | 0.061 | pitx1 | -0.040 |
| eva1ba | 0.061 | si:dkey-12l12.1 | -0.039 |