| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| gpr135 | 0.112 | sox3 | -0.038 |
| LOC100535676 | 0.104 | XLOC-003689 | -0.034 |
| trnY | 0.101 | XLOC-003690 | -0.031 |
| LOC100334202 | 0.100 | id1 | -0.031 |
| tspeara | 0.094 | hmgb2a | -0.031 |
| pimr49 | 0.089 | rplp1 | -0.030 |
| prok1 | 0.087 | si:ch211-137a8.4 | -0.030 |
| barhl1b | 0.085 | mdka | -0.029 |
| LOC100333290 | 0.084 | sb:cb81 | -0.028 |
| ftr92 | 0.084 | si:dkey-151g10.6 | -0.028 |
| nrn1a | 0.084 | fabp7a | -0.028 |
| PCP4 | 0.083 | notch3 | -0.028 |
| ptx3a | 0.082 | cldn5a | -0.028 |
| pappaa | 0.081 | her15.1 | -0.028 |
| neurod2 | 0.078 | msi1 | -0.027 |
| fgfrl1b | 0.077 | abhd6a | -0.026 |
| arhgap20b | 0.075 | XLOC-003692 | -0.026 |
| twist2 | 0.075 | lfng | -0.025 |
| col15a1a | 0.075 | si:ch73-21g5.7 | -0.025 |
| aqp3b | 0.074 | si:ch73-265d7.2 | -0.025 |
| si:dkey-1h24.6 | 0.073 | cd82a | -0.025 |
| insb | 0.071 | rplp2l | -0.025 |
| LOC110438056 | 0.071 | phgdh | -0.025 |
| LOC101882750 | 0.070 | rps2 | -0.025 |
| CR759845.2 | 0.070 | rpl7 | -0.024 |
| LOC100005187.1 | 0.069 | her2 | -0.024 |
| rbp7b | 0.069 | her8a | -0.024 |
| neurod1 | 0.068 | ahcy | -0.024 |
| ntd5 | 0.066 | rps12 | -0.024 |
| wnt2bb | 0.066 | gpm6bb | -0.024 |
| mnx1 | 0.065 | btg2 | -0.024 |
| gabrp | 0.065 | msna | -0.024 |
| mir124-6 | 0.065 | fgfr3 | -0.023 |
| trhra | 0.064 | sox19a | -0.023 |
| atoh1b | 0.064 | rps27a | -0.023 |