| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.128 | NC-002333.4 | -0.140 |
| cldnd | 0.122 | si:ch73-1a9.3 | -0.085 |
| ccna1 | 0.121 | hmga1a | -0.082 |
| zgc:56676 | 0.121 | hmgb2a | -0.074 |
| zgc:173742 | 0.119 | ptmab | -0.074 |
| acp5a | 0.118 | hmgn6 | -0.073 |
| blf | 0.116 | hspb1 | -0.071 |
| h2af1al | 0.115 | hnrnpa0b | -0.070 |
| slc16a3 | 0.115 | si:ch211-137a8.4 | -0.066 |
| npc2 | 0.114 | si:ch211-222l21.1 | -0.064 |
| gdf3 | 0.113 | dynll1 | -0.059 |
| ccna2 | 0.113 | si:ch211-152c2.3 | -0.058 |
| dnajc1 | 0.112 | anp32e | -0.058 |
| glulb | 0.112 | zgc:110425 | -0.055 |
| pfn2 | 0.111 | eef1a1l1 | -0.055 |
| dctpp1 | 0.111 | rpl7 | -0.054 |
| rcor1 | 0.110 | mt-co1 | -0.054 |
| mkrn4 | 0.109 | sp5l | -0.053 |
| ccnb2 | 0.109 | add3b | -0.052 |
| cldn7b | 0.108 | serpinh1b | -0.052 |
| rbm7 | 0.108 | pkdccb | -0.051 |
| avd | 0.108 | cdx4 | -0.051 |
| ccnb1 | 0.107 | gnl3 | -0.050 |
| zgc:113424 | 0.107 | rpl36a | -0.050 |
| ctss2.1 | 0.107 | marcksl1b | -0.049 |
| siva1 | 0.106 | hmgn2 | -0.049 |
| h1m | 0.105 | crabp2b | -0.047 |
| f11r.1 | 0.103 | stm | -0.047 |
| pttg1 | 0.103 | rpl11 | -0.047 |
| si:dkey-42i9.4 | 0.103 | rps19 | -0.046 |
| gtf2a1 | 0.103 | hspe1 | -0.046 |
| spink2.1 | 0.102 | si:ch73-141c7.1 | -0.046 |
| fnbp1l | 0.102 | apoc1 | -0.045 |
| gapdh | 0.101 | sept12 | -0.045 |
| zgc:56699 | 0.101 | rplp1 | -0.045 |