| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.284 | si:ch211-222l21.1 | -0.217 |
| h1m | 0.284 | hmga1a | -0.205 |
| mkrn4 | 0.268 | si:ch73-1a9.3 | -0.199 |
| ccna1 | 0.257 | hnrnpa0b | -0.198 |
| blf | 0.252 | hspb1 | -0.198 |
| acp5a | 0.247 | eef1a1l1 | -0.195 |
| cldnd | 0.247 | si:ch211-152c2.3 | -0.188 |
| npc2 | 0.242 | ptmab | -0.182 |
| rbm7 | 0.239 | hmgn6 | -0.176 |
| zgc:173742 | 0.238 | dynll1 | -0.175 |
| gtf2a1 | 0.237 | hmgb2a | -0.173 |
| spink2.1 | 0.237 | rplp1 | -0.172 |
| zgc:100951 | 0.227 | ybx1 | -0.171 |
| lamp2 | 0.226 | add3b | -0.170 |
| zgc:77118 | 0.225 | anp32e | -0.161 |
| slc16a3 | 0.225 | rpl7a | -0.161 |
| glulb | 0.223 | hmgn2 | -0.160 |
| gdf3 | 0.220 | sox2 | -0.157 |
| zgc:56676 | 0.219 | rps2 | -0.148 |
| rcor1 | 0.217 | sp5l | -0.147 |
| dnajc1 | 0.217 | rps12 | -0.147 |
| h2af1al | 0.213 | rps15a | -0.145 |
| aktip | 0.210 | rpl27 | -0.145 |
| pfn2 | 0.206 | rps7 | -0.140 |
| dctpp1 | 0.206 | rpl26 | -0.138 |
| inka1a | 0.206 | rps4x | -0.137 |
| cdh1 | 0.201 | NC-002333.4 | -0.137 |
| ctss2.1 | 0.198 | npm1a | -0.135 |
| si:dkey-68o6.5 | 0.197 | rpl13a | -0.134 |
| zfand5b | 0.197 | marcksl1b | -0.133 |
| fdx1 | 0.196 | h2afvb | -0.133 |
| cldng | 0.196 | rpl7 | -0.132 |
| ctsba | 0.195 | hmgb2b | -0.132 |
| tent5c | 0.194 | rps19 | -0.132 |
| map1lc3c | 0.193 | si:ch211-137a8.4 | -0.130 |