Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pcolceb | 0.485 | hmgb1b | -0.039 |
| tnxba | 0.481 | si:ch211-288g17.3 | -0.036 |
| mia | 0.439 | cbx3a | -0.035 |
| matn1 | 0.422 | ddx39ab | -0.035 |
| wisp3 | 0.418 | apex1 | -0.034 |
| itih1 | 0.405 | snrpf | -0.034 |
| cthrc1b | 0.369 | stmn1a | -0.034 |
| acana | 0.366 | marcksl1a | -0.034 |
| snorc | 0.366 | fabp3 | -0.033 |
| LOC100330861 | 0.363 | marcksb | -0.033 |
| otos | 0.345 | seta | -0.033 |
| ptgdsa | 0.335 | snrpb | -0.032 |
| acanb | 0.326 | snrpd1 | -0.032 |
| CYTL1 | 0.317 | hmgb3a | -0.031 |
| fgfbp2b | 0.312 | pcna | -0.031 |
| col9a1a | 0.306 | cct2 | -0.031 |
| csgalnact1a | 0.305 | dut | -0.030 |
| col11a2 | 0.294 | hdac1 | -0.030 |
| arsia | 0.292 | mcm7 | -0.030 |
| epyc | 0.291 | h2afva | -0.029 |
| hapln1b | 0.290 | si:dkey-42i9.4 | -0.029 |
| ucmab | 0.260 | ddx39aa | -0.028 |
| si:ch211-106h11.3 | 0.259 | rbbp4 | -0.028 |
| AL929222.2 | 0.256 | si:ch211-137a8.4 | -0.028 |
| col9a3 | 0.255 | her15.1 | -0.028 |
| srpx | 0.254 | chd4a | -0.027 |
| si:dkey-19b23.8 | 0.249 | snrpe | -0.027 |
| meltf | 0.248 | nova2 | -0.026 |
| cnmd | 0.247 | nucks1a | -0.026 |
| col9a2 | 0.240 | rrm1 | -0.026 |
| itih6 | 0.231 | smarce1 | -0.026 |
| prss35 | 0.229 | sumo3b | -0.026 |
| il16 | 0.227 | alyref | -0.025 |
| col2a1a | 0.222 | hnrnpa1a | -0.025 |
| si:dkey-6n6.1 | 0.210 | hnrnpub | -0.025 |