| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| dlx5a | 0.541 | meis1b | -0.076 |
| dlx1a | 0.525 | mab21l1 | -0.075 |
| dlx2a | 0.516 | ebf3a | -0.073 |
| dlx2b | 0.485 | mab21l2 | -0.072 |
| arxb | 0.427 | nrn1a | -0.068 |
| dlx6a | 0.384 | meis2b | -0.067 |
| sp9 | 0.381 | hoxb3a | -0.066 |
| CU929240.1 | 0.319 | npm1a | -0.065 |
| lhx6 | 0.302 | irx1a | -0.065 |
| foxg1a | 0.201 | adcyap1b | -0.064 |
| lhx8b | 0.181 | hmgb2a | -0.062 |
| lhx8a | 0.178 | irx5a | -0.062 |
| metap1d | 0.177 | pax3a | -0.061 |
| nkx2.1 | 0.174 | en2b | -0.061 |
| gad2 | 0.160 | dkc1 | -0.058 |
| LOC103911600 | 0.148 | irx3a | -0.057 |
| slc32a1 | 0.137 | nop58 | -0.057 |
| vax1 | 0.134 | fbl | -0.056 |
| pax6a | 0.122 | irx3b | -0.056 |
| si:dkey-175g6.2 | 0.121 | nhlh2 | -0.055 |
| slc6a1b | 0.120 | apoeb | -0.055 |
| sox4a | 0.117 | ebf1a | -0.054 |
| gsx2 | 0.114 | banf1 | -0.052 |
| cxxc4 | 0.106 | rarga | -0.052 |
| rpp25b | 0.106 | rsl1d1 | -0.052 |
| gad1b | 0.103 | si:ch211-152c2.3 | -0.051 |
| foxd1 | 0.102 | hspb1 | -0.051 |
| six3a | 0.101 | nop2 | -0.051 |
| CU467822.1 | 0.098 | nop56 | -0.051 |
| nrxn3a | 0.096 | slc17a6a | -0.051 |
| cort | 0.093 | anp32b | -0.051 |
| nkx2.2a | 0.092 | pax7a | -0.050 |
| chodl | 0.092 | snu13b | -0.050 |
| isl1 | 0.091 | pcna | -0.050 |
| sept5a | 0.090 | nhp2 | -0.050 |