| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbxta | 0.297 | sox3 | -0.121 |
| wnt11f2 | 0.270 | cited4b | -0.112 |
| hes6 | 0.236 | zgc:113424 | -0.111 |
| cdx4 | 0.215 | blf | -0.107 |
| sebox | 0.213 | ska2 | -0.106 |
| eve1 | 0.210 | mid1ip1l | -0.105 |
| rasgef1ba | 0.186 | zgc:64022 | -0.105 |
| ybx1 | 0.185 | cldng | -0.101 |
| tpbga | 0.175 | cited2 | -0.101 |
| BX927327.1 | 0.173 | shisa2a | -0.101 |
| fscn1a | 0.171 | acp5a | -0.101 |
| ier2a | 0.162 | btg4 | -0.100 |
| wnt5b | 0.162 | mknk2a | -0.098 |
| ndr2 | 0.160 | zgc:100951 | -0.098 |
| eef1a1l1 | 0.159 | fbxo45 | -0.097 |
| osr1 | 0.157 | nanog | -0.097 |
| spry2 | 0.154 | spink2.1 | -0.096 |
| dld | 0.150 | ccna1 | -0.096 |
| fgf8a | 0.148 | thy1 | -0.095 |
| znfl2a | 0.148 | tent5c | -0.094 |
| notum1a | 0.145 | si:ch73-299h12.2 | -0.093 |
| tdgf1 | 0.144 | cldnd | -0.091 |
| lrwd1 | 0.143 | exd2 | -0.091 |
| arl4ab | 0.143 | fam117ab | -0.090 |
| apela | 0.142 | h2af1al | -0.089 |
| foxd3 | 0.141 | si:dkey-11o15.10 | -0.088 |
| rplp2l | 0.141 | me3 | -0.088 |
| rps15a | 0.140 | si:ch211-145c1.1 | -0.088 |
| nradd | 0.139 | wee2 | -0.088 |
| lft1 | 0.138 | FO834825.1 | -0.088 |
| hmga1a | 0.138 | mkrn4 | -0.087 |
| wu:fb97g03 | 0.137 | si:ch211-132b12.8 | -0.086 |
| morc3b | 0.136 | dctpp1 | -0.086 |
| tbx16 | 0.135 | maco1a | -0.086 |
| si:dkey-151g10.6 | 0.135 | eloal | -0.084 |