| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| meis2b | 0.163 | crx | -0.066 |
| pax10 | 0.142 | anp32e | -0.066 |
| pbx1a | 0.123 | otx5 | -0.063 |
| lhx9 | 0.119 | syt5b | -0.062 |
| gbx2 | 0.116 | hmgb2a | -0.060 |
| mab21l1 | 0.111 | histh1l | -0.059 |
| pax6a | 0.108 | neurod4 | -0.058 |
| elavl3 | 0.093 | ndrg1b | -0.053 |
| pax6b | 0.089 | neurod1 | -0.053 |
| rbfox2 | 0.089 | rs1a | -0.050 |
| meis1b | 0.086 | vsx1 | -0.047 |
| scrt1a | 0.083 | cspg5b | -0.044 |
| zfhx3 | 0.081 | scg3 | -0.043 |
| tubb5 | 0.081 | ppdpfa | -0.043 |
| wnt2 | 0.081 | ddah2 | -0.042 |
| celf2 | 0.080 | sypb | -0.042 |
| id3 | 0.078 | samsn1a | -0.042 |
| bhlhe22 | 0.075 | stxbp1b | -0.041 |
| mab21l2 | 0.074 | atp2b1b | -0.040 |
| fabp3 | 0.074 | btg1 | -0.040 |
| nrp1a | 0.074 | prdm1b | -0.039 |
| fscn1a | 0.074 | tulp1a | -0.038 |
| tspan18b | 0.071 | gnb3a | -0.038 |
| pbx1b | 0.071 | rbp4l | -0.038 |
| slc32a1 | 0.069 | ckmt2a | -0.038 |
| lhx2b | 0.069 | si:ch73-28h20.1 | -0.037 |
| znf385a | 0.066 | cplx4a | -0.037 |
| dpysl3 | 0.066 | six7 | -0.037 |
| si:ch211-284f22.3 | 0.065 | LOC103909376 | -0.037 |
| si:ch73-386h18.1 | 0.065 | XLOC-014477 | -0.036 |
| cx43 | 0.064 | nexn | -0.036 |
| plxna2 | 0.062 | ppp1r1b | -0.036 |
| nfasca | 0.061 | tmx3a | -0.036 |
| srgap3 | 0.060 | zgc:109965 | -0.036 |
| igdcc3 | 0.060 | otx2b | -0.036 |