| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdon | 0.156 | ptmab | -0.080 |
| wnt4a | 0.147 | ckbb | -0.071 |
| wls | 0.131 | gpm6aa | -0.068 |
| msx1a | 0.128 | tuba1c | -0.063 |
| id1 | 0.126 | hmgb1a | -0.063 |
| msx2b | 0.125 | gpm6ab | -0.059 |
| eif4ebp3l | 0.120 | ptmaa | -0.058 |
| nog1 | 0.118 | si:ch73-1a9.3 | -0.058 |
| tbx5a | 0.116 | hmgn6 | -0.057 |
| bmp2a | 0.116 | cadm3 | -0.057 |
| rps27l | 0.111 | foxg1b | -0.051 |
| slbp2 | 0.107 | atp6v0cb | -0.049 |
| mfap2 | 0.107 | anp32e | -0.045 |
| aldh1a2 | 0.106 | tuba1a | -0.045 |
| slc6a2 | 0.106 | snap25b | -0.045 |
| smad1 | 0.106 | rnasekb | -0.044 |
| atoh8 | 0.105 | crx | -0.043 |
| her9 | 0.105 | btg1 | -0.043 |
| apela | 0.104 | sypb | -0.043 |
| id3 | 0.104 | neurod4 | -0.043 |
| col15a1b | 0.103 | pvalb1 | -0.043 |
| bambia | 0.102 | COX3 | -0.042 |
| fabp11a | 0.101 | nova2 | -0.042 |
| LOC101887189 | 0.099 | ndrg4 | -0.041 |
| tpm4a | 0.099 | rtn1a | -0.041 |
| msx1b | 0.098 | epb41a | -0.041 |
| rspo3 | 0.097 | fabp7a | -0.040 |
| asip2b | 0.095 | rorb | -0.040 |
| ackr3b | 0.095 | pdcl | -0.040 |
| zbtb16a | 0.094 | syt5b | -0.039 |
| XLOC-044268 | 0.093 | cspg5a | -0.039 |
| si:ch211-265g22.4 | 0.093 | hbbe1.3 | -0.039 |
| paics | 0.091 | si:dkey-276j7.1 | -0.039 |
| sdc4 | 0.090 | mpp6b | -0.038 |
| slc38a5b | 0.090 | stmn1b | -0.038 |