| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| six3a | 0.404 | hoxb3a | -0.083 |
| six6a | 0.290 | nrn1a | -0.081 |
| six6b | 0.270 | meis1b | -0.081 |
| rx3 | 0.242 | mab21l1 | -0.078 |
| fzd5 | 0.225 | pax3a | -0.073 |
| sox1b | 0.183 | sb:cb81 | -0.069 |
| vax1 | 0.176 | meis2b | -0.067 |
| vax2 | 0.168 | adcyap1b | -0.066 |
| fezf2 | 0.166 | ebf3a | -0.066 |
| fzd8b | 0.145 | COX3 | -0.064 |
| sfrp5 | 0.145 | pou3f3b | -0.063 |
| fezf1 | 0.141 | ptmaa | -0.063 |
| eno4 | 0.137 | pou3f1 | -0.063 |
| nkx2.1 | 0.129 | marcksl1b | -0.063 |
| rx2 | 0.127 | si:ch73-30b17.2 | -0.062 |
| nkx2.4b | 0.123 | nhlh2 | -0.062 |
| six7 | 0.123 | lrrn1 | -0.061 |
| fzd8a | 0.120 | mab21l2 | -0.060 |
| si:ch73-335l21.4 | 0.118 | si:ch211-57n23.4 | -0.060 |
| rx1 | 0.117 | scrt2 | -0.060 |
| shha | 0.117 | pax7a | -0.060 |
| id3 | 0.110 | irx3a | -0.058 |
| her9 | 0.109 | meis2a | -0.057 |
| foxd1 | 0.108 | plp1a | -0.057 |
| nkx2.2b | 0.108 | irx5a | -0.057 |
| fgfrl1a | 0.108 | nr2f1a | -0.055 |
| bmpr1ba | 0.107 | mt-co2 | -0.054 |
| zfp36l1a | 0.107 | ebf2 | -0.054 |
| sst1.2 | 0.101 | CR383676.1 | -0.054 |
| XLOC-003718 | 0.096 | raraa | -0.054 |
| lhx8a | 0.095 | CU634008.1 | -0.053 |
| shisa2a | 0.092 | tmsb4x | -0.053 |
| hmx4 | 0.091 | rarga | -0.053 |
| tmem108 | 0.089 | ebf1a | -0.053 |
| pax6b | 0.089 | rtn1a | -0.052 |