| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| vsx1 | 0.126 | NC-002333.4 | -0.053 |
| rorb | 0.124 | cdx4 | -0.044 |
| crx | 0.111 | cdx1a | -0.039 |
| neurod4 | 0.110 | lig1 | -0.038 |
| hes2.2 | 0.109 | rps18 | -0.037 |
| ndrg1b | 0.105 | srrm1 | -0.035 |
| BX547993.2 | 0.104 | tbx16 | -0.035 |
| LOC108191949 | 0.097 | arf1 | -0.035 |
| si:dkey-238o13.4 | 0.097 | COX7A2 | -0.034 |
| rs1a | 0.093 | thrap3b | -0.033 |
| foxg1b | 0.091 | wnt5b | -0.033 |
| CR854899.1 | 0.088 | acin1a | -0.033 |
| cadm3 | 0.088 | srrt | -0.033 |
| gpm6aa | 0.087 | rbm38 | -0.033 |
| foxn4 | 0.086 | vox | -0.033 |
| fabp7a | 0.085 | si:ch211-152c2.3 | -0.033 |
| CU634008.1 | 0.083 | hnrnpa1a | -0.033 |
| gnb3a | 0.080 | si:dkey-92i17.2 | -0.033 |
| CR759927.3 | 0.079 | stm | -0.032 |
| cspg5b | 0.079 | hnrnpm | -0.032 |
| otx5 | 0.075 | sp5l | -0.032 |
| insm1a | 0.075 | ISCU | -0.032 |
| olig2 | 0.074 | hnrnpub | -0.032 |
| ckbb | 0.073 | efnb2b | -0.032 |
| otx2b | 0.073 | hnrnpl | -0.032 |
| syt5b | 0.073 | gnl3 | -0.032 |
| si:ch1073-83n3.2 | 0.073 | fam133b | -0.032 |
| hes2.1 | 0.072 | ctnnb1 | -0.031 |
| prph2l | 0.071 | nucks1b | -0.031 |
| gng13b | 0.071 | s100a1 | -0.031 |
| snap25b | 0.070 | zmp:0000000624 | -0.031 |
| cplx4a | 0.070 | nr6a1a | -0.031 |
| guk1b | 0.070 | cdk11b | -0.031 |
| scrt2 | 0.070 | smc1al | -0.031 |
| LOC108184071 | 0.070 | rbmx2 | -0.030 |