| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.123 | NC-002333.4 | -0.169 |
| gtf2a1 | 0.111 | hmgb2a | -0.082 |
| srsf1a | 0.110 | akap12b | -0.068 |
| ccna2 | 0.110 | si:dkey-108k21.10 | -0.059 |
| ttf1 | 0.106 | ncl | -0.055 |
| cldnd | 0.105 | mt-co1 | -0.053 |
| ctbp1 | 0.103 | zgc:110425 | -0.051 |
| si:dkey-68o6.5 | 0.102 | mt-co2 | -0.049 |
| pabpc1a | 0.102 | galnt7 | -0.046 |
| ccng1 | 0.101 | nucks1a | -0.045 |
| rbm7 | 0.100 | si:ch211-113a14.18 | -0.044 |
| ubc | 0.100 | wu:fb97g03 | -0.041 |
| banf1 | 0.100 | c7b | -0.041 |
| tpx2 | 0.100 | ripply1 | -0.041 |
| lamp2 | 0.099 | nhsl1b | -0.039 |
| pttg1 | 0.099 | eef1a1l1 | -0.039 |
| ccna1 | 0.098 | eef1a1l2 | -0.039 |
| hnrnpabb | 0.097 | cdx4 | -0.038 |
| srsf7a | 0.096 | si:ch211-262h13.3 | -0.038 |
| thy1 | 0.096 | pou5f3 | -0.036 |
| syncrip | 0.096 | tbxta | -0.036 |
| tent4b | 0.096 | rpl11 | -0.035 |
| hdgfl2 | 0.096 | rplp0 | -0.035 |
| cfl1 | 0.095 | wnt11f2 | -0.034 |
| nfyc | 0.095 | si:ch211-131k2.2 | -0.034 |
| cstf3 | 0.095 | zgc:153405 | -0.034 |
| cnot8 | 0.094 | brd1a | -0.033 |
| cdca7a | 0.094 | mt-nd5 | -0.033 |
| cnot6a | 0.091 | LOC100008030 | -0.033 |
| mkrn4 | 0.091 | CABZ01058721.1 | -0.032 |
| bzw1b | 0.091 | CU972512.1 | -0.032 |
| pho | 0.091 | arl13a | -0.032 |
| thoc2 | 0.091 | prox1b | -0.032 |
| h2af1al | 0.091 | znf1099 | -0.032 |
| mcm4 | 0.090 | hmgn2 | -0.032 |