Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| slit1b | 0.229 | ptmaa | -0.047 |
| npr3 | 0.226 | hmgb3a | -0.043 |
| clu | 0.217 | ptmab | -0.043 |
| ctgfa | 0.212 | hnrnpaba | -0.041 |
| myl9a | 0.208 | rtn1a | -0.041 |
| col9a3 | 0.201 | hmgb1b | -0.041 |
| LOC103911482 | 0.199 | marcksb | -0.040 |
| shhb | 0.190 | sox3 | -0.039 |
| optc | 0.188 | elavl3 | -0.039 |
| col8a1a | 0.184 | si:ch211-288g17.3 | -0.037 |
| trabd2b | 0.182 | si:ch211-137a8.4 | -0.037 |
| col2a1b | 0.178 | apex1 | -0.036 |
| aplnr2 | 0.173 | hmgb1a | -0.035 |
| loxl5b | 0.172 | CU467822.1 | -0.035 |
| BX510949.1 | 0.171 | tmsb4x | -0.034 |
| spon1b | 0.169 | hnrnpa0b | -0.033 |
| cers3b | 0.169 | cspg5a | -0.033 |
| BX908782.3 | 0.169 | si:dkey-56m19.5 | -0.033 |
| fxyd1 | 0.164 | mdkb | -0.032 |
| scospondin | 0.163 | ckbb | -0.032 |
| arxa | 0.162 | tmsb | -0.032 |
| col9a1b | 0.162 | XLOC-003689 | -0.032 |
| cyr61l2 | 0.162 | myt1b | -0.032 |
| r3hdml | 0.161 | sox11b | -0.032 |
| b3gnt7l | 0.159 | mex3b | -0.032 |
| shha | 0.159 | si:dkey-276j7.1 | -0.032 |
| slit2 | 0.158 | tmeff1b | -0.031 |
| col9a2 | 0.158 | nova2 | -0.031 |
| spon2a | 0.156 | sb:cb81 | -0.031 |
| vasna | 0.154 | ddx39ab | -0.031 |
| col5a1 | 0.154 | cct2 | -0.031 |
| lcn15 | 0.153 | setb | -0.030 |
| thbs1b | 0.151 | hnrnpa0a | -0.030 |
| matn4 | 0.150 | cadm3 | -0.030 |
| sulf1 | 0.148 | lfng | -0.030 |